Communications

Simka: fast kmer-based method for estimating the similarity between numerous metagenomic datasets
Best Poster Award
G Benoit, P Peterlongo, D Lavenier, C Lemaitre
JOBIM, French Worshop on Biologie Informatics ans Mathematics, 2015

Assembling Raspberry on Raspberry Pi
D. Lavenier, JM Primat
Personal communication, 2014

The Open Source Genomic Tool Box for Genome Assembly and Analysis
E. Drezen, G. Rizk, R. Chikhi, C. Deltel, C. Lemaitre, P. Peterlongo, D. Lavenier
Bio-IT, Boston, 2014

Speeding up NGS software development
D. Lavenier
Sequencing, Finishing and Analysis in the Future Meeting, Santa Fe, USA, May 2014

MINIA on a Raspberry Pi, Assembling a 100 Mbp Genome on a Credit Card Sized Computer
Best Poster Award
G. Collet, G. Rizk, R. Chikhi, D. Lavenier
JOBIM, French Worshop on Biologie Informatics ans Mathematics, 2013

De novo comparison of metagenomic data.A new tool: Compareads
Best Poster Award
N. Maillet, C. Lemaitre, R. Chikhi, D. Lavenier, P. Peterlongo
JOBIM, French Worshop on Biologie Informatics ans Mathematics, 2012

Next Generation Sequencing Data Processing. How reconfigurable computing can help?
Keynote Speaker
D. Lavenier
International Conference on Engineering of Reconfigurable Systems and Algorithms, 2011

How to accelerate genomic sequence alignment 4X using half an FPGA
A. Cornu, S. Derrien, D. Lavenier,
EE Times Design, vol 7, no 5, 2011

Comparison of large scale metagenomic data in Tara Oceans project
N. Maillet, D. Lavenier, P. Peterlongo
Jacques-Monod Conerence, Integrative Ecological Genomics, 2011

biomanycores.org: a repository of interoperable open-source code for many-core bioinformatics
JF. Berthelot, C. Deltel, M. Giraud, S. Janot,L. Jourdan, D. Lavenier, H. Touzet, JF. Viarré
JOBIM, French Worshop on Biologie Informatics ans Mathematics, 2011

Biomanycores, open-source parallel code for many-core bioinformatics
M. Giraud, S. Janot, JF. Berthelot, C. Deltel, L. Jourdan, D. Lavenier, H. Touzet, JF. Viarré
12th Annual Bioinformatics Open Source Conference, 2011

GPU Accelerted QTLMap
G. Chapuis, O. Filangi, P. Leroy, JM. Elsen, D. Lavenier
15Th QTL-MAS Workshop, 2011

Fine-Grained Parallelism for Genomic Computation
Keynote Speaker
D. Lavenier
SIAM Conf. on Parallel Processing for Scientific Computing, San Francisco, CA, 2006

Optimisation of the NCBI-BLAST code for high throughput in silico comparative genomics in the DEISA project
O. Glorieux, M. Ferré, A, Fouilloux, I. Dupays, D. Raux, D. Lavenier, Y. Malthièry, P. Raynier, Y. Tourmen
JOBIM, French Worshop on Biologie Informatics ans Mathematics, 2005

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